{ "schemaVersion": 2, "dataset": "Neural Depth morphology collection", "retrievedAt": "2026-11-09", "provenanceFile": "/data/neural-morphology/PROVENANCE.md", "providers": [ { "name": "Allen Institute for Brain Science", "dataset": "Allen Cell Types Database", "url": "https://celltypes.brain-map.org/", "license": { "name": "Allen Institute Terms of Use", "url": "https://alleninstitute.org/legal/terms-of-use", "citationPolicy": "https://alleninstitute.org/legal/citation-policy", "scope": "Research or other noncommercial use; commercial redistribution requires written permission. This is not a Creative Commons license. Consult the full terms for all conditions." }, "citation": "Allen Institute for Brain Science. Allen Cell Types Database. Specimens 480114344 and 341442651. Accessed 8 November 2026.", "citationRequirement": "Display an accurate, discoverable Allen Institute source citation on the same page as the morphology, with links to the specific source data." }, { "name": "NeuroMorpho.Org", "url": "https://neuromorpho.org/", "rrid": "RRID:SCR_002145", "license": { "name": "Creative Commons Attribution 4.0", "url": "https://creativecommons.org/licenses/by/4.0/", "terms": "https://neuromorpho.org/useterm.jsp" }, "citation": "Tecuatl C, Ljungquist B, Ascoli GA (2024). Accelerating the continuous community sharing of digital neuromorphology data. FASEB Bioadv. 6(7):207-221.", "doi": "https://doi.org/10.1096/fba.2024-00048", "citationRequirement": "Credit the source studies associated with each reconstruction and NeuroMorpho.Org." } ], "displayLimitations": "A selective collection of 27 source reconstructions across regions, species, ages and preparation methods. Twenty-five sources appear in one continuous comparative landscape with overlapping neighborhoods. A developing Cajal-Retzius cell and a cultured oligodendrocyte remain in the comparative atlas only. This composition is not a section through one brain. Labels follow source morphology families at different levels of granularity, not a complete or uniform cell-type taxonomy. Original source shapes are projected from several rigid viewing angles, oriented and rescaled without changing their branch geometry. Curved soma bands, spacing, relative proportions and population overlap are qualitative artistic choices. Selected local source-arbor contacts, activity, timing and word formation are illustrative, not measured connectivity or a physiological simulation. Glia are excluded from spike animation and word recruitment. Unknown signal metadata does not assert excitation. The mature starburst amacrine reconstruction is also excluded from action-potential animation because this cell class uses graded signaling.", "swcColumns": [ "id", "type", "x", "y", "z", "radius", "parent" ], "swcTypes": { "1": "soma", "2": "axon", "3": "basal dendrite", "4": "apical dendrite", "7": "glial process" }, "cells": [ { "id": "480114344", "label": "Mouse layer 5 spiny pyramidal-type neuron", "file": "/data/neural-morphology/allen-480114344.swc", "species": "Mus musculus", "kind": "pyramidal", "source": "https://celltypes.brain-map.org/experiment/morphology/480114344", "downloadUrl": "https://api.brain-map.org/api/v2/well_known_file_download/491771448", "metadataUrl": "https://api.brain-map.org/api/v2/data/query.json?criteria=model::ApiCellTypesSpecimenDetail,rma::criteria,[specimen__id$eq480114344]", "metadataFile": "/data/neural-morphology/allen-480114344-metadata.json", "sha256": "e14442b6184082fcad2e1358887b388e9561c96b1b9c0eae79d2200f39419ac6", "bytes": 177665, "nodeCount": 4037, "nodeCountsByType": { "1": 1, "2": 77, "3": 2197, "4": 1762 }, "rootCount": 1, "reconstructionType": "dendrite-only", "reconstructionCompleteness": "Dendrite-only reconstruction with a short axon segment present in the SWC. The available axon is incomplete.", "sourceAnnotations": { "structure": "Primary visual area, layer 5", "structureAcronym": "VISp5", "corticalLayer": "5", "dendriteType": "spiny", "apical": "intact", "transgenicLine": "Rorb-IRES2-Cre", "cellReporterStatus": "positive" }, "classificationNote": "Pyramidal is a display grouping based on the source spiny/intact-apical annotations and the presence of apical and basal dendrites in the SWC; no transcriptomic subtype is assigned.", "coordinateBounds": { "x": [ 149.7336, 611.2998 ], "y": [ 53.1166, 621.8315 ], "z": [ 12.3872, 93.9814 ] }, "fileTransformations": "None. Original downloaded SWC bytes and header comments are preserved.", "provider": "Allen Institute for Brain Science", "license": { "name": "Allen Institute Terms of Use", "url": "https://alleninstitute.org/legal/terms-of-use", "citationPolicy": "https://alleninstitute.org/legal/citation-policy", "scope": "Research or other noncommercial use; commercial redistribution requires written permission. This is not a Creative Commons license. Consult the full terms for all conditions." }, "projection": "xy", "region": "Primary visual area, layer 5", "family": "Cortical pyramidal", "compressedFile": "/data/neural-morphology/allen-480114344.swc.gz", "compressedBytes": 76241, "compressedSha256": "c92181b68f86a136c92d8df84db0317bb30c10dc04ae1076ba3b18ea71f3ad4d", "preview": "/data/neural-morphology/allen-480114344-preview.svg", "caveats": [ "Dendrite-only reconstruction with a short axon segment present in the SWC. The available axon is incomplete.", "Pyramidal is a display grouping based on the source spiny/intact-apical annotations and the presence of apical and basal dendrites in the SWC; no transcriptomic subtype is assigned." ], "integrity": "dendrite-only", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layer 5", "field": true } }, { "id": "341442651", "label": "Mouse layer 2/3 Pvalb-line aspiny neuron", "file": "/data/neural-morphology/allen-341442651.swc", "species": "Mus musculus", "kind": "interneuron", "source": "https://celltypes.brain-map.org/experiment/morphology/341442651", "downloadUrl": "https://api.brain-map.org/api/v2/well_known_file_download/657253249", "metadataUrl": "https://api.brain-map.org/api/v2/data/query.json?criteria=model::ApiCellTypesSpecimenDetail,rma::criteria,[specimen__id$eq341442651]", "metadataFile": "/data/neural-morphology/allen-341442651-metadata.json", "sha256": "af0d42f3b8834c1cbca1e4e6f2b09d215a8d3e1213f82027627377db1424fa63", "bytes": 496990, "nodeCount": 11143, "nodeCountsByType": { "1": 1, "2": 8920, "3": 2222 }, "rootCount": 84, "reconstructionType": "full", "reconstructionCompleteness": "Labeled full by the source. The SWC contains one soma-rooted tree and 83 separate axon fragments. This label does not establish complete in-vivo arbor preservation or measured synaptic connectivity.", "sourceAnnotations": { "structure": "Primary visual area, layer 2/3", "structureAcronym": "VISp2/3", "corticalLayer": "2/3", "dendriteType": "aspiny", "apical": "NA", "transgenicLine": "Pvalb-IRES-Cre", "cellReporterStatus": "positive" }, "classificationNote": "Interneuron is a display grouping based on the source Pvalb driver-line, positive reporter and aspiny annotations; no basket/chandelier or transcriptomic subtype is assigned.", "coordinateBounds": { "x": [ 64.3939, 537.2304 ], "y": [ 22.4922, 467.6924 ], "z": [ 17.64, 143.92 ] }, "fileTransformations": "None. Original downloaded SWC bytes and header comments are preserved.", "provider": "Allen Institute for Brain Science", "license": { "name": "Allen Institute Terms of Use", "url": "https://alleninstitute.org/legal/terms-of-use", "citationPolicy": "https://alleninstitute.org/legal/citation-policy", "scope": "Research or other noncommercial use; commercial redistribution requires written permission. This is not a Creative Commons license. Consult the full terms for all conditions." }, "projection": "xy", "region": "Primary visual area, layer 2/3", "family": "Pvalb-line aspiny", "compressedFile": "/data/neural-morphology/allen-341442651.swc.gz", "compressedBytes": 207048, "compressedSha256": "7cadf3a961f733597a931ac3182d36299c954ad7331bac231bd4aa5e1760663a", "preview": "/data/neural-morphology/allen-341442651-preview.svg", "caveats": [ "Labeled full by the source. The SWC contains one soma-rooted tree and 83 separate axon fragments. This label does not establish complete in-vivo arbor preservation or measured synaptic connectivity.", "Interneuron is a display grouping based on the source Pvalb driver-line, positive reporter and aspiny annotations; no basket/chandelier or transcriptomic subtype is assigned." ], "integrity": "full", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layers 2/3", "field": true } }, { "id": "nmo-10069", "label": "Purkinje cell", "family": "Purkinje", "kind": "neuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "cerebellum / cerebellar cortex / Purkinje layer", "archive": "Dusart", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=Purkinje-slice-ageP43-6", "sourceApi": "https://neuromorpho.org/api/neuron/id/10069", "downloadUrl": "https://neuromorpho.org/dableFiles/dusart/CNG%20version/Purkinje-slice-ageP43-6.CNG.swc", "file": "/data/neural-morphology/nmo-10069.swc", "doi": "https://doi.org/10.1523/JNEUROSCI.2977-12.2013", "originalCitation": "https://doi.org/10.1523/JNEUROSCI.2977-12.2013", "originalDois": [ "https://doi.org/10.1523/JNEUROSCI.2977-12.2013" ], "originalPMIDs": [ "23719821" ], "originalCellTypes": [ "Purkinje", "principal cell" ], "domain": "Dendrites, Soma, No Axon", "integrity": "Dendrites Complete", "experimentCondition": [ "Control" ], "ageClassification": "young adult", "protocol": "in vitro", "sourceNote": null, "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "Purkinje-slice-ageP43-6", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "a2d659d1833bb6b6fc59423222701c10cc96c04eb35e4dec0492ba3943ea2df0", "sha256": "a2d659d1833bb6b6fc59423222701c10cc96c04eb35e4dec0492ba3943ea2df0", "bytes": 157336, "nodeCount": 4156, "nodeCountsByType": { "1": 3, "3": 4153 }, "rootCount": 1, "extentMicrometers": { "x": 166.06, "y": 232.76, "z": 16 }, "fileTransformations": [], "signalSource": "https://pmc.ncbi.nlm.nih.gov/articles/PMC5853127/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Dusart archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source SWC contains no axon compartment. No axon geometry has been added." ], "metadataFile": "/data/neural-morphology/nmo-10069-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-10069.swc.gz", "compressedBytes": 59843, "compressedSha256": "e8a4e912a76dc8c07a81870ca6ef9eaded2df801369faa1d72808f0b49e8517c", "preview": "/data/neural-morphology/nmo-10069-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cerebellum", "layer": "Purkinje-cell layer", "field": true, "note": "A sparse, curved soma sheet with dendritic fans oriented toward its molecular side." } }, { "id": "nmo-32464", "label": "Cerebellar granule cell", "family": "Cerebellar granule", "kind": "neuron", "signal": "unknown", "displayScale": 0.66, "projection": "xy", "species": "clouded leopard", "region": "cerebellum / cerebellar cortex / stratum granulare / dorsal / right", "archive": "Jacobs", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=195-4-7nj", "sourceApi": "https://neuromorpho.org/api/neuron/id/32464", "downloadUrl": "https://neuromorpho.org/dableFiles/jacobs/CNG%20version/195-4-7nj.CNG.swc", "file": "/data/neural-morphology/nmo-32464.swc", "doi": "https://doi.org/10.3389/fnana.2014.00024", "originalCitation": "https://doi.org/10.3389/fnana.2014.00024", "originalDois": [ "https://doi.org/10.3389/fnana.2014.00024" ], "originalPMIDs": [ "24795574" ], "originalCellTypes": [ "granule", "principal cell" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "Tissue was sectioned serially perpendicular to the long axis of the folia. ", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "195-4-7nj", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "ad490d230c3a40f25933f8b4f90047bc8bbb15859c7f56ebdbe84fdf37ca8276", "sha256": "ad490d230c3a40f25933f8b4f90047bc8bbb15859c7f56ebdbe84fdf37ca8276", "bytes": 2399, "nodeCount": 61, "nodeCountsByType": { "1": 3, "2": 6, "3": 52 }, "rootCount": 1, "extentMicrometers": { "x": 50.92, "y": 76.31, "z": 35.4 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Jacobs archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-32464-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-32464.swc.gz", "compressedBytes": 1178, "compressedSha256": "8eab05db8b0ce9c7cc051a8fc1ade586f6228c47f6ed470120995a1afd2ffc99", "preview": "/data/neural-morphology/nmo-32464-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cerebellum", "layer": "Granular layer", "field": true, "note": "Small, numerous instances convey qualitative density. The source is clouded leopard; displayed proportions are not a census and no missing parallel fibers are generated." } }, { "id": "nmo-61463", "label": "Cerebellar Golgi cell", "family": "Golgi", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "cerebellum / cerebellar cortex / vermis", "archive": "Szoboszlay", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=140307-C1", "sourceApi": "https://neuromorpho.org/api/neuron/id/61463", "downloadUrl": "https://neuromorpho.org/dableFiles/szoboszlay/CNG%20version/140307-C1.CNG.swc", "file": "/data/neural-morphology/nmo-61463.swc", "doi": "https://doi.org/10.1016/j.neuron.2016.03.029", "originalCitation": "https://doi.org/10.1016/j.neuron.2016.03.029", "originalDois": [ "https://doi.org/10.1016/j.neuron.2016.03.029" ], "originalPMIDs": [ "27133465" ], "originalCellTypes": [ "interneuron", "GABAergic", "Golgi" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Complete, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "young", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "140307-C1", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "26fb2f119e05384ee3ce12d7538981ecc2c438f6becdfe6d11f67a027d66efc2", "sha256": "26fb2f119e05384ee3ce12d7538981ecc2c438f6becdfe6d11f67a027d66efc2", "bytes": 64374, "nodeCount": 1738, "nodeCountsByType": { "1": 3, "2": 59, "3": 1676 }, "rootCount": 1, "extentMicrometers": { "x": 293.69, "y": 323.08000000000004, "z": 80.01 }, "fileTransformations": [], "signalSource": "https://pubmed.ncbi.nlm.nih.gov/27257627/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Szoboszlay archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete." ], "metadataFile": "/data/neural-morphology/nmo-61463-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-61463.swc.gz", "compressedBytes": 21763, "compressedSha256": "9882e138884349ed8ea2e684f2593f97b52f20f9bf3319481dc0699832109a78", "preview": "/data/neural-morphology/nmo-61463-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cerebellum", "layer": "Granular layer", "field": true } }, { "id": "nmo-66828", "label": "Cerebellar stellate cell", "family": "Cerebellar stellate", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "cerebellum / vermis", "archive": "Nusser", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=GlyT2_030_Slice3_Stellate_cell", "sourceApi": "https://neuromorpho.org/api/neuron/id/66828", "downloadUrl": "https://neuromorpho.org/dableFiles/nusser/CNG%20version/GlyT2_030_Slice3_Stellate_cell.CNG.swc", "file": "/data/neural-morphology/nmo-66828.swc", "doi": "https://doi.org/10.1523/ENEURO.0055-16.2016", "originalCitation": "https://doi.org/10.1523/ENEURO.0055-16.2016", "originalDois": [ "https://doi.org/10.1523/ENEURO.0055-16.2016" ], "originalPMIDs": [ "27257627" ], "originalCellTypes": [ "interneuron", "stellate" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "young adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "GlyT2_030_Slice3_Stellate_cell", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "232166f5f2dfe168765a58719de1b07a9e3f847803d5a1eb038b686c6d248ad8", "sha256": "232166f5f2dfe168765a58719de1b07a9e3f847803d5a1eb038b686c6d248ad8", "bytes": 106784, "nodeCount": 3112, "nodeCountsByType": { "1": 10, "2": 2111, "3": 991 }, "rootCount": 1, "extentMicrometers": { "x": 174.13, "y": 314.39, "z": 62 }, "fileTransformations": [], "signalSource": "https://doi.org/10.1523/ENEURO.0055-16.2016", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Nusser archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment.", "NeuroMorpho labels this reconstruction stellate but lists granule layer. The original study identifies stellate cells as molecular-layer interneurons, and Ma et al. (2020) explicitly uses this named reconstruction as a mouse stellate model. The layer discrepancy is unresolved, so the display uses the verified broader region." ], "metadataFile": "/data/neural-morphology/nmo-66828-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-66828.swc.gz", "compressedBytes": 37405, "compressedSha256": "e82d49d34c0a2c09f2e2e9bec721616c0f569a049faa79e43f6f4d57e1762a5c", "preview": "/data/neural-morphology/nmo-66828-preview.svg", "canSpike": true, "originalRegion": "cerebellum / vermis / granule layer", "classificationSources": [ "https://doi.org/10.1523/ENEURO.0055-16.2016", "https://pmc.ncbi.nlm.nih.gov/articles/PMC7459332/" ], "sourceRegionNote": "NeuroMorpho labels this reconstruction stellate but lists granule layer. The original study identifies stellate cells as molecular-layer interneurons, and Ma et al. (2020) explicitly uses this named reconstruction as a mouse stellate model. The layer discrepancy is unresolved, so the display uses the verified broader region.", "displayAnatomy": { "view": "cerebellum", "layer": "Molecular layer, by cell-family interpretation", "field": true, "note": "Placement follows the verified stellate family. The unresolved source layer annotation is retained in Source context." } }, { "id": "nmo-66825", "label": "Lugaro cell", "family": "Lugaro", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "cerebellum / vermis / granule layer", "archive": "Nusser", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=GlyT2_042_Slice4_Lugaro_cell-2", "sourceApi": "https://neuromorpho.org/api/neuron/id/66825", "downloadUrl": "https://neuromorpho.org/dableFiles/nusser/CNG%20version/GlyT2_042_Slice4_Lugaro_cell-2.CNG.swc", "file": "/data/neural-morphology/nmo-66825.swc", "doi": "https://doi.org/10.1523/ENEURO.0055-16.2016", "originalCitation": "https://doi.org/10.1523/ENEURO.0055-16.2016", "originalDois": [ "https://doi.org/10.1523/ENEURO.0055-16.2016" ], "originalPMIDs": [ "27257627" ], "originalCellTypes": [ "interneuron", "Lugaro" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "young adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "GlyT2_042_Slice4_Lugaro_cell-2", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "2fe715904a0878772858edbe1954b597ac74f36fdabc23306eb14cb1db22309d", "sha256": "2fe715904a0878772858edbe1954b597ac74f36fdabc23306eb14cb1db22309d", "bytes": 104330, "nodeCount": 2919, "nodeCountsByType": { "1": 3, "2": 69, "3": 2847 }, "rootCount": 1, "extentMicrometers": { "x": 283.39, "y": 491.55999999999995, "z": 140 }, "fileTransformations": [], "signalSource": "https://pubmed.ncbi.nlm.nih.gov/27257627/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Nusser archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-66825-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-66825.swc.gz", "compressedBytes": 35828, "compressedSha256": "da273e4fb92a7c7f751dd6d49fcaf674d73fb4cdd4ae92c55e834526f0d62978", "preview": "/data/neural-morphology/nmo-66825-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cerebellum", "layer": "Immediately beneath the Purkinje-cell sheet", "field": true, "note": "Sparse somata and a tangential dendritic orientation." } }, { "id": "nmo-104452", "label": "Cortical basket cell", "family": "Basket", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "neocortex / medial prefrontal / layer 2", "archive": "Gonzalez-Burgos", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=TT-04-03-14-1R", "sourceApi": "https://neuromorpho.org/api/neuron/id/104452", "downloadUrl": "https://neuromorpho.org/dableFiles/gonzalez-burgos/CNG%20version/TT-04-03-14-1R.CNG.swc", "file": "/data/neural-morphology/nmo-104452.swc", "doi": "https://doi.org/10.1523/ENEURO.0208-18.2018", "originalCitation": "https://doi.org/10.1523/ENEURO.0208-18.2018", "originalDois": [ "https://doi.org/10.1523/ENEURO.0208-18.2018" ], "originalPMIDs": [ "-5" ], "originalCellTypes": [ "interneuron", "basket", "Parvalbumin (PV)-positive" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites & Axon Moderate", "experimentCondition": [ "Control" ], "ageClassification": "young adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "TT-04-03-14-1R", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "de3b819e707bf21e45957981c943f9f047a6b4d91d2703d4103ac9f0026d7b5d", "sha256": "de3b819e707bf21e45957981c943f9f047a6b4d91d2703d4103ac9f0026d7b5d", "bytes": 620812, "nodeCount": 15670, "nodeCountsByType": { "1": 3, "2": 13375, "3": 2292 }, "rootCount": 1, "extentMicrometers": { "x": 270.14, "y": 589.55, "z": 177.01 }, "fileTransformations": [], "signalSource": "https://pmc.ncbi.nlm.nih.gov/articles/PMC6354785/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Gonzalez-Burgos archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-104452-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-104452.swc.gz", "compressedBytes": 185905, "compressedSha256": "7d3a6006fbe18467bba957e3140b68009bfdf1b78168d44d89f372c89414e867", "preview": "/data/neural-morphology/nmo-104452-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layer 2", "field": true, "note": "Cortical basket source. No distal-dendrite output contacts are fabricated for this perisomatic family." } }, { "id": "nmo-104461", "label": "Chandelier cell", "family": "Chandelier", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "neocortex / medial prefrontal / layer 2", "archive": "Gonzalez-Burgos", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=TT-12-18-13-1R", "sourceApi": "https://neuromorpho.org/api/neuron/id/104461", "downloadUrl": "https://neuromorpho.org/dableFiles/gonzalez-burgos/CNG%20version/TT-12-18-13-1R.CNG.swc", "file": "/data/neural-morphology/nmo-104461.swc", "doi": "https://doi.org/10.1523/ENEURO.0208-18.2018", "originalCitation": "https://doi.org/10.1523/ENEURO.0208-18.2018", "originalDois": [ "https://doi.org/10.1523/ENEURO.0208-18.2018" ], "originalPMIDs": [ "-5" ], "originalCellTypes": [ "interneuron", "Chandelier" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites & Axon Moderate", "experimentCondition": [ "Control" ], "ageClassification": "young adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "TT-12-18-13-1R", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "8e3b95c7d2029178edda01b5e1c7ffe37e9fc880fe2b3515936f2465c43f48d6", "sha256": "8e3b95c7d2029178edda01b5e1c7ffe37e9fc880fe2b3515936f2465c43f48d6", "bytes": 958016, "nodeCount": 23437, "nodeCountsByType": { "1": 3, "2": 21577, "3": 1857 }, "rootCount": 1, "extentMicrometers": { "x": 277.69, "y": 466.97, "z": 100.97999999999999 }, "fileTransformations": [], "signalSource": "https://pmc.ncbi.nlm.nih.gov/articles/PMC6354785/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Gonzalez-Burgos archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-104461-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-104461.swc.gz", "compressedBytes": 273810, "compressedSha256": "019d2075fd32d1bfa42f980df1cf04afae93adc337064aedb541732c623bfc5c", "preview": "/data/neural-morphology/nmo-104461-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layer 2", "field": true, "note": "Axonal cartridges follow the cortical radial direction. No axon-initial-segment targets are invented." } }, { "id": "nmo-130609", "label": "Martinotti cell", "family": "Martinotti", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "neocortex / occipital / primary visual / layer 4", "archive": "Tolias", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=2017-22-08-slice-2-cell-7-rotated", "sourceApi": "https://neuromorpho.org/api/neuron/id/130609", "downloadUrl": "https://neuromorpho.org/dableFiles/tolias/CNG%20version/2017-22-08-slice-2-cell-7-rotated.CNG.swc", "file": "/data/neural-morphology/nmo-130609.swc", "doi": "https://doi.org/10.1038/s41467-019-12058-z", "originalCitation": "https://doi.org/10.1038/s41467-019-12058-z", "originalDois": [ "https://doi.org/10.1038/s41467-019-12058-z" ], "originalPMIDs": [ "31519874" ], "originalCellTypes": [ "interneuron", "Martinotti", "Somatostatin (SOM)-positive" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites & Axon Complete", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "In the Morphology File (Original) version of the SWC files the z axis is to aligned with the normal towards the pia", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "2017-22-08-slice-2-cell-7-rotated", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "137a3c4e3fdb6193e6503b6ec682ffc70b141f454e4b09d7858224a1c7d99a7a", "sha256": "137a3c4e3fdb6193e6503b6ec682ffc70b141f454e4b09d7858224a1c7d99a7a", "bytes": 1154991, "nodeCount": 28698, "nodeCountsByType": { "1": 3, "2": 28105, "3": 590 }, "rootCount": 1, "extentMicrometers": { "x": 385.8, "y": 507.43, "z": 99.07000000000001 }, "fileTransformations": [], "signalSource": "https://pmc.ncbi.nlm.nih.gov/articles/PMC6744474/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Tolias archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [], "metadataFile": "/data/neural-morphology/nmo-130609-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-130609.swc.gz", "compressedBytes": 316355, "compressedSha256": "fab55cf94223b3e86a4cc569304c4cd09992e744d3772a7b07dc27531a5554d3", "preview": "/data/neural-morphology/nmo-130609-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layer 4", "field": true } }, { "id": "nmo-107156", "label": "Neurogliaform cell", "family": "Neurogliaform", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "human", "region": "neocortex / temporal / layer 1", "archive": "Tamas", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=Fig2c_cell1_1402022rm", "sourceApi": "https://neuromorpho.org/api/neuron/id/107156", "downloadUrl": "https://neuromorpho.org/dableFiles/tamas/CNG%20version/Fig2c_cell1_1402022rm.CNG.swc", "file": "/data/neural-morphology/nmo-107156.swc", "doi": "https://doi.org/10.1038/s41593-018-0205-2", "originalCitation": "https://doi.org/10.1038/s41593-018-0205-2", "originalDois": [ "https://doi.org/10.1038/s41593-018-0205-2" ], "originalPMIDs": [ "30150662" ], "originalCellTypes": [ "interneuron", "neurogliaform" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites & Axon Complete", "experimentCondition": [ "Control" ], "ageClassification": "not reported", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "Fig2c_cell1_1402022rm", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "be9d8c79aec622e485f33cae7f01284573b3d5b87067628a2db2fd9a1dd6dbe1", "sha256": "be9d8c79aec622e485f33cae7f01284573b3d5b87067628a2db2fd9a1dd6dbe1", "bytes": 819790, "nodeCount": 21051, "nodeCountsByType": { "1": 3, "2": 19935, "3": 1113 }, "rootCount": 1, "extentMicrometers": { "x": 385.24, "y": 668.4100000000001, "z": 237.65 }, "fileTransformations": [], "signalSource": "https://www.nature.com/articles/nature08503", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Tamas archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [], "metadataFile": "/data/neural-morphology/nmo-107156-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-107156.swc.gz", "compressedBytes": 273830, "compressedSha256": "5727ca473cee23a276e5b97baf2dba46395180367e00bae96ce4c787cf5c82df", "preview": "/data/neural-morphology/nmo-107156-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layer 1", "field": true, "note": "A human temporal-cortex example within a comparative collection of cortical forms." } }, { "id": "nmo-130669", "label": "Cortical bipolar interneuron", "family": "Cortical bipolar", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "neocortex / occipital / primary visual / layer 4", "archive": "Tolias", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=2017-03-07-slice-2-cell-7-rotated", "sourceApi": "https://neuromorpho.org/api/neuron/id/130669", "downloadUrl": "https://neuromorpho.org/dableFiles/tolias/CNG%20version/2017-03-07-slice-2-cell-7-rotated.CNG.swc", "file": "/data/neural-morphology/nmo-130669.swc", "doi": "https://doi.org/10.1038/s41467-019-12058-z", "originalCitation": "https://doi.org/10.1038/s41467-019-12058-z", "originalDois": [ "https://doi.org/10.1038/s41467-019-12058-z" ], "originalPMIDs": [ "31519874" ], "originalCellTypes": [ "interneuron", "bipolar", "Vasoactive Intestinal Peptide (VIP)-positive" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites & Axon Complete", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "In the Morphology File (Original) version of the SWC files the z axis is to aligned with the normal towards the pia", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "2017-03-07-slice-2-cell-7-rotated", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "5b2eacb25f41257ddc9aab6d1f9b53c6e90229fb553ec5d4c821ef9719b8cc80", "sha256": "5b2eacb25f41257ddc9aab6d1f9b53c6e90229fb553ec5d4c821ef9719b8cc80", "bytes": 253968, "nodeCount": 6626, "nodeCountsByType": { "1": 3, "2": 3268, "3": 3355 }, "rootCount": 1, "extentMicrometers": { "x": 154.88, "y": 948.87, "z": 88.72 }, "fileTransformations": [], "signalSource": "https://pmc.ncbi.nlm.nih.gov/articles/PMC6744474/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Tolias archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [], "metadataFile": "/data/neural-morphology/nmo-130669-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-130669.swc.gz", "compressedBytes": 74389, "compressedSha256": "8247205c61784c69c7fdd425a2e7e4870e9e67251fc636653ab191b45650c4b2", "preview": "/data/neural-morphology/nmo-130669-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layer 4", "field": true } }, { "id": "nmo-61567", "label": "Bitufted interneuron", "family": "Bitufted", "kind": "interneuron", "signal": "unknown", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "neocortex / occipital / primary visual / layer 2-3", "archive": "Tolias", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=L23BTC-j130221a-cell-7", "sourceApi": "https://neuromorpho.org/api/neuron/id/61567", "downloadUrl": "https://neuromorpho.org/dableFiles/tolias/CNG%20version/L23BTC-j130221a-cell-7.CNG.swc", "file": "/data/neural-morphology/nmo-61567.swc", "doi": "https://doi.org/10.1126/science.aac9462", "originalCitation": "https://doi.org/10.1126/science.aac9462", "originalDois": [ "https://doi.org/10.1126/science.aac9462" ], "originalPMIDs": [ "26612957" ], "originalCellTypes": [ "interneuron", "bitufted" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Complete, Axon Moderate", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "L23BTC-j130221a-cell-7", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "f7c65849c3057bc74bab624339dc72846ec118d23df6134adc68b8fa79509a66", "sha256": "f7c65849c3057bc74bab624339dc72846ec118d23df6134adc68b8fa79509a66", "bytes": 233766, "nodeCount": 6042, "nodeCountsByType": { "1": 3, "2": 3737, "3": 2302 }, "rootCount": 1, "extentMicrometers": { "x": 520.21, "y": 706.21, "z": 134.09 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Tolias archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-61567-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-61567.swc.gz", "compressedBytes": 74030, "compressedSha256": "bbbaaa331e0c476a5707f45ccb4f9cc3507d4903b9b32b94bddb31b526834f60", "preview": "/data/neural-morphology/nmo-61567-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Layers 2/3", "field": true } }, { "id": "nmo-7582", "label": "Double-bouquet interneuron", "family": "Double bouquet", "kind": "interneuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "rat", "region": "neocortex / frontal", "archive": "Kubota", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=double-bouquet", "sourceApi": "https://neuromorpho.org/api/neuron/id/7582", "downloadUrl": "https://neuromorpho.org/dableFiles/kubota/CNG%20version/double-bouquet.CNG.swc", "file": "/data/neural-morphology/nmo-7582.swc", "doi": "https://doi.org/10.1038/srep00089", "originalCitation": "https://doi.org/10.1038/srep00089", "originalDois": [ "https://doi.org/10.1038/srep00089" ], "originalPMIDs": [ "22355608" ], "originalCellTypes": [ "double bouquet", "interneuron" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites & Axon Complete", "experimentCondition": [ "Control" ], "ageClassification": "young", "protocol": "in vitro", "sourceNote": null, "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "double-bouquet", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "ab0e10a2610c418b2d6670483008abc176ef01b95e72abc4160c8f96c46dbb1d", "sha256": "ab0e10a2610c418b2d6670483008abc176ef01b95e72abc4160c8f96c46dbb1d", "bytes": 251045, "nodeCount": 6695, "nodeCountsByType": { "1": 3, "2": 4517, "3": 2175 }, "rootCount": 1, "extentMicrometers": { "x": 287.97, "y": 1155.49, "z": 283.83000000000004 }, "fileTransformations": [], "signalSource": "https://pmc.ncbi.nlm.nih.gov/articles/PMC6729850/", "signalBasis": "Published physiological class, not inferred from the rendered shape. This is a broad display category, not a simulated postsynaptic effect.", "attribution": "Reconstruction from the Kubota archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [], "metadataFile": "/data/neural-morphology/nmo-7582-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-7582.swc.gz", "compressedBytes": 87282, "compressedSha256": "60f9d4e1721b058ea719ba325d19d89849d5a7300489e23c21855ea7df5666eb", "preview": "/data/neural-morphology/nmo-7582-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Cortical comparison; source layer unspecified", "field": true, "note": "Shown sparsely among the comparative cortical forms. Its soma is not assigned to a numbered cortical layer." } }, { "id": "nmo-124344", "label": "Cajal-Retzius cell", "family": "Cajal-Retzius", "kind": "neuron", "signal": "unknown", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "neocortex / layer 1", "archive": "Anstoetz", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=Anstoetz_NC_CajalRetzius_15", "sourceApi": "https://neuromorpho.org/api/neuron/id/124344", "downloadUrl": "https://neuromorpho.org/dableFiles/anstoetz/CNG%20version/Anstoetz_NC_CajalRetzius_15.CNG.swc", "file": "/data/neural-morphology/nmo-124344.swc", "doi": "https://doi.org/10.1007/s00429-013-0627-2", "originalCitation": "https://doi.org/10.1007/s00429-013-0627-2", "originalDois": [ "https://doi.org/10.1007/s00429-013-0627-2" ], "originalPMIDs": [ "24026287" ], "originalCellTypes": [ "principal cell", "Cajal-Retzius" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites & Axon Moderate", "experimentCondition": [ "Control" ], "ageClassification": "young", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "Anstoetz_NC_CajalRetzius_15", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "adb09ab0966d4808a396a1812d840f0af6ca8071c92562901b646ce2bdb08b69", "sha256": "adb09ab0966d4808a396a1812d840f0af6ca8071c92562901b646ce2bdb08b69", "bytes": 60635, "nodeCount": 1594, "nodeCountsByType": { "1": 3, "2": 1217, "4": 374 }, "rootCount": 1, "extentMicrometers": { "x": 97.86, "y": 827.54, "z": 90.43 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Anstoetz archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-124344-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-124344.swc.gz", "compressedBytes": 19807, "compressedSha256": "392149878599cfc61d1764de0bcfe2d1a7d5725bfb04be3a0aeb06dbc87e97f6", "preview": "/data/neural-morphology/nmo-124344-preview.svg", "canSpike": true, "displayAnatomy": { "view": "cortex", "layer": "Developing layer 1", "field": false, "note": "The source animal is P7-11. Retained as a developmental comparison, outside the main neural landscape." } }, { "id": "nmo-102095", "label": "Dentate granule cell", "family": "Dentate granule", "kind": "neuron", "signal": "unknown", "displayScale": 0.8, "projection": "xy", "species": "mouse", "region": "hippocampus / dentate gyrus / granule layer / outer", "archive": "Nandi", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=052417dgc1-1KS", "sourceApi": "https://neuromorpho.org/api/neuron/id/102095", "downloadUrl": "https://neuromorpho.org/dableFiles/nandi/CNG%20version/052417dgc1-1KS.CNG.swc", "file": "/data/neural-morphology/nmo-102095.swc", "doi": "https://doi.org/10.1016/j.neuroscience.2017.11.017", "originalCitation": "https://doi.org/10.1016/j.neuroscience.2017.11.017", "originalDois": [ "https://doi.org/10.1016/j.neuroscience.2017.11.017" ], "originalPMIDs": [ "29155277" ], "originalCellTypes": [ "principal cell", "granule", "mature" ], "domain": "Dendrites, Soma, No Axon", "integrity": "Dendrites Complete", "experimentCondition": [ "Control" ], "ageClassification": "young adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "052417dgc1-1KS", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "676235af1058fab891f334d6a1adf4c7abe118bb076f46abcf34c9a07c953575", "sha256": "676235af1058fab891f334d6a1adf4c7abe118bb076f46abcf34c9a07c953575", "bytes": 6624, "nodeCount": 166, "nodeCountsByType": { "1": 3, "3": 163 }, "rootCount": 1, "extentMicrometers": { "x": 124.46000000000001, "y": 187.71, "z": 68.46 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Nandi archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source SWC contains no axon compartment. No axon geometry has been added." ], "metadataFile": "/data/neural-morphology/nmo-102095-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-102095.swc.gz", "compressedBytes": 2401, "compressedSha256": "df8a101f8643825bd114e30d226bf3deae2496a9a853108de44a323acc536e63", "preview": "/data/neural-morphology/nmo-102095-preview.svg", "canSpike": true, "displayAnatomy": { "view": "hippocampus", "layer": "Dentate granule-cell layer", "field": true, "note": "A separate dense ribbon, with dendrites directed toward the molecular side. No direct dentate-to-CA1 pathway is drawn." } }, { "id": "nmo-100", "label": "CA1 pyramidal neuron", "family": "CA1 pyramidal", "kind": "pyramidal", "signal": "unknown", "displayScale": 1, "projection": "xy", "species": "rat", "region": "hippocampus / CA1", "archive": "Turner", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=n419", "sourceApi": "https://neuromorpho.org/api/neuron/id/100", "downloadUrl": "https://neuromorpho.org/dableFiles/turner/CNG%20version/n419.CNG.swc", "file": "/data/neural-morphology/nmo-100.swc", "doi": "https://doi.org/10.1002/(SICI)1096-9861(19980216)391:3%3C335::AID-CNE4%3E3.0.CO;2-2", "originalCitation": "https://doi.org/10.1002/(SICI)1096-9861(19980216)391:3%3C335::AID-CNE4%3E3.0.CO;2-2", "originalDois": [ "https://doi.org/10.1002/(SICI)1096-9861(19980216)391:3%3C335::AID-CNE4%3E3.0.CO;2-2" ], "originalPMIDs": [ "9492204" ], "originalCellTypes": [ "pyramidal", "principal cell" ], "domain": "Dendrites, Soma, No Axon", "integrity": "Dendrites Complete", "experimentCondition": [ "Control" ], "ageClassification": "young", "protocol": "in vivo", "sourceNote": "When originally released, this reconstruction had been incompletely processed, and this issue was fixed in release 6.3 (February 2016). The pre-6.3 version of the processed file is available for download here.", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "n419", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "39711b83c3793466ec13c90fcbe68e25df9b6d661ea2364eca5930b48b492af6", "sha256": "39711b83c3793466ec13c90fcbe68e25df9b6d661ea2364eca5930b48b492af6", "bytes": 156021, "nodeCount": 4229, "nodeCountsByType": { "1": 14, "3": 1661, "4": 2554 }, "rootCount": 1, "extentMicrometers": { "x": 302.18, "y": 717.0899999999999, "z": 257.64 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Turner archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source SWC contains no axon compartment. No axon geometry has been added." ], "metadataFile": "/data/neural-morphology/nmo-100-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-100.swc.gz", "compressedBytes": 58020, "compressedSha256": "3d118ebed40401e59f2b720b410966ef9eca961dcd1e991297688be9522841c1", "preview": "/data/neural-morphology/nmo-100-preview.svg", "canSpike": true, "displayAnatomy": { "view": "hippocampus", "layer": "CA1 stratum pyramidale", "field": true, "note": "A curved soma band with apical arbors toward radiatum and basal arbors toward oriens." } }, { "id": "nmo-102974", "label": "Direction-selective retinal ganglion cell", "family": "Retinal ganglion", "kind": "neuron", "signal": "unknown", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "retina", "archive": "Feller", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=141012_Pair2DSGC", "sourceApi": "https://neuromorpho.org/api/neuron/id/102974", "downloadUrl": "https://neuromorpho.org/dableFiles/feller/CNG%20version/141012_Pair2DSGC.CNG.swc", "file": "/data/neural-morphology/nmo-102974.swc", "doi": "https://doi.org/10.1016/j.cub.2018.03.001", "originalCitation": "https://doi.org/10.1016/j.cub.2018.03.001", "originalDois": [ "https://doi.org/10.1016/j.cub.2018.03.001" ], "originalPMIDs": [ "29606419" ], "originalCellTypes": [ "principal cell", "ganglion", "direction-selective" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "Paired SAC-DSGC recording", "attributes": "No Diameter, 3D, Angles", "sourceReconstructionName": "141012_Pair2DSGC", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "71bbba9ffd498f352d7880b2937bcd07616f76b6c60b92857f238c473ae6eab3", "sha256": "71bbba9ffd498f352d7880b2937bcd07616f76b6c60b92857f238c473ae6eab3", "bytes": 172815, "nodeCount": 5045, "nodeCountsByType": { "1": 11, "2": 294, "3": 4740 }, "rootCount": 1, "extentMicrometers": { "x": 51.55, "y": 78.99000000000001, "z": 25 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Feller archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment.", "The source does not provide measured diameters; rendered widths are illustrative." ], "metadataFile": "/data/neural-morphology/nmo-102974-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-102974.swc.gz", "compressedBytes": 50733, "compressedSha256": "c45cddfcbaf606b3db97eae928f33bb498d866324b7ce83a7eff2ada2e9ff400", "preview": "/data/neural-morphology/nmo-102974-preview.svg", "canSpike": true, "displayAnatomy": { "view": "retina", "layer": "Retinal arbor plexus, en face", "field": true, "note": "No exact ON/OFF sublamina or recurrent ganglion-cell axon network is assigned." } }, { "id": "nmo-102946", "label": "Starburst amacrine cell", "family": "Starburst amacrine", "kind": "interneuron", "signal": "unknown", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "retina", "archive": "Feller", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=150501_pair1sac", "sourceApi": "https://neuromorpho.org/api/neuron/id/102946", "downloadUrl": "https://neuromorpho.org/dableFiles/feller/CNG%20version/150501_pair1sac.CNG.swc", "file": "/data/neural-morphology/nmo-102946.swc", "doi": "https://doi.org/10.1016/j.cub.2018.03.001", "originalCitation": "https://doi.org/10.1016/j.cub.2018.03.001", "originalDois": [ "https://doi.org/10.1016/j.cub.2018.03.001" ], "originalPMIDs": [ "29606419" ], "originalCellTypes": [ "interneuron", "amacrine", "Starburst" ], "domain": "Dendrites, Soma, No Axon", "integrity": "Dendrites Moderate", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "Paired SAC-DSGC recording", "attributes": "No Diameter, 3D, Angles", "sourceReconstructionName": "150501_pair1sac", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "49137093b374c019865a51e4bf03958404f77d088b4b0f63123832696636a4f7", "sha256": "49137093b374c019865a51e4bf03958404f77d088b4b0f63123832696636a4f7", "bytes": 148655, "nodeCount": 4299, "nodeCountsByType": { "1": 23, "3": 4276 }, "rootCount": 1, "extentMicrometers": { "x": 35.16, "y": 69.49, "z": 22.5 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Feller archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source SWC contains no axon compartment. No axon geometry has been added.", "The source records moderate reconstruction completeness for at least one compartment.", "The source does not provide measured diameters; rendered widths are illustrative.", "Mature mouse starburst amacrine cells are non-spiking and release GABA and acetylcholine. No action-potential activity is assigned.", "This mature starburst amacrine cell is shown without action-potential firing. Its signaling is graded; the illustration does not model its dual transmitter output." ], "metadataFile": "/data/neural-morphology/nmo-102946-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-102946.swc.gz", "compressedBytes": 43009, "compressedSha256": "62de457626ba81a3da17e4ac52ec83a03d604cb861a47e946aefc1809a9a5444", "preview": "/data/neural-morphology/nmo-102946-preview.svg", "canSpike": false, "activityMode": "graded", "activitySource": "https://pmc.ncbi.nlm.nih.gov/articles/PMC8351878/", "activityNote": "Mature mouse starburst amacrine cells are non-spiking and release GABA and acetylcholine. No action-potential activity is assigned.", "displayAnatomy": { "view": "retina", "layer": "Retinal arbor plexus, en face", "field": true, "note": "Overlapping radial arbors retain their graded, nonspiking treatment. Their presynaptic dendrites are not converted into fabricated axons." } }, { "id": "nmo-130730", "label": "Thalamic relay neuron", "family": "Thalamic relay", "kind": "neuron", "signal": "unknown", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "thalamus / lateral geniculate nucleus / dorsal", "archive": "VanHook", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=18703cell3", "sourceApi": "https://neuromorpho.org/api/neuron/id/130730", "downloadUrl": "https://neuromorpho.org/dableFiles/vanhook/CNG%20version/18703cell3.CNG.swc", "file": "/data/neural-morphology/nmo-130730.swc", "doi": "https://doi.org/10.3389/fncel.2019.00426", "originalCitation": "https://doi.org/10.3389/fncel.2019.00426", "originalDois": [ "https://doi.org/10.3389/fncel.2019.00426" ], "originalPMIDs": [ "31607867" ], "originalCellTypes": [ "principal cell", "thalamocortical", "relay" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "ex vivo", "sourceNote": "", "attributes": "No Diameter, 3D, Angles", "sourceReconstructionName": "18703cell3", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "661e8fb163a4fa3e7e0a0bb31ce7486364a2c18e31d4eba41fd278d93c9c4e63", "sha256": "661e8fb163a4fa3e7e0a0bb31ce7486364a2c18e31d4eba41fd278d93c9c4e63", "bytes": 243878, "nodeCount": 6885, "nodeCountsByType": { "1": 3, "2": 541, "3": 6341 }, "rootCount": 1, "extentMicrometers": { "x": 335.84, "y": 420.16999999999996, "z": 244 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the VanHook archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment.", "The source does not provide measured diameters; rendered widths are illustrative." ], "metadataFile": "/data/neural-morphology/nmo-130730-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-130730.swc.gz", "compressedBytes": 73172, "compressedSha256": "6fb262aebc651e13da6566562d9b6cc44c21a9a264e7291af5423d8d9139f5c5", "preview": "/data/neural-morphology/nmo-130730-preview.svg", "canSpike": true, "displayAnatomy": { "view": "thalamus", "layer": "Dorsal lateral geniculate nucleus", "field": true, "note": "An unlaminated illustrative cluster. No primate LGN layer scheme is imposed on this mouse source." } }, { "id": "nmo-111356", "label": "Olfactory mitral cell", "family": "Mitral", "kind": "neuron", "signal": "unknown", "displayScale": 1, "projection": "yz", "species": "mouse", "region": "main olfactory bulb / external plexiform layer / deep", "archive": "Igarashi", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=TM6", "sourceApi": "https://neuromorpho.org/api/neuron/id/111356", "downloadUrl": "https://neuromorpho.org/dableFiles/igarashi/CNG%20version/TM6.CNG.swc", "file": "/data/neural-morphology/nmo-111356.swc", "doi": "https://doi.org/10.1038/s41598-018-25740-x", "originalCitation": "https://doi.org/10.1038/s41598-018-25740-x", "originalDois": [ "https://doi.org/10.1038/s41598-018-25740-x" ], "originalPMIDs": [ "29769664" ], "originalCellTypes": [ "principal cell", "mitral" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "TM6", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "dca3def5ef0c63966caad6991ed6e383a4fd7419dfbd5a01d042bad7af4ae65c", "sha256": "dca3def5ef0c63966caad6991ed6e383a4fd7419dfbd5a01d042bad7af4ae65c", "bytes": 96163, "nodeCount": 2412, "nodeCountsByType": { "1": 3, "2": 46, "3": 1991, "4": 372 }, "rootCount": 1, "extentMicrometers": { "x": 1306.31, "y": 1693.32, "z": 414.33 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Igarashi archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-111356-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-111356.swc.gz", "compressedBytes": 35386, "compressedSha256": "d956ed6bcec3886bbfec0fe4ad9225a3ce644ee300c91b80f7926324ebbd76e3", "preview": "/data/neural-morphology/nmo-111356-preview.svg", "canSpike": true, "displayAnatomy": { "view": "olfactory-bulb", "layer": "Mitral-cell layer", "field": true, "note": "Somata sit deeper than the tufted-cell population. A YZ projection exposes the separation between the recorded apical and lateral arbors. The collection lacks olfactory granule interneurons, so no complete local microcircuit is implied." } }, { "id": "nmo-111355", "label": "Olfactory tufted cell", "family": "Tufted", "kind": "neuron", "signal": "unknown", "displayScale": 1, "projection": "yz", "species": "mouse", "region": "main olfactory bulb / external plexiform layer / superficial", "archive": "Igarashi", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=10ventrolateral_2T0925", "sourceApi": "https://neuromorpho.org/api/neuron/id/111355", "downloadUrl": "https://neuromorpho.org/dableFiles/igarashi/CNG%20version/10ventrolateral_2T0925.CNG.swc", "file": "/data/neural-morphology/nmo-111355.swc", "doi": "https://doi.org/10.1038/s41598-018-25740-x", "originalCitation": "https://doi.org/10.1038/s41598-018-25740-x", "originalDois": [ "https://doi.org/10.1038/s41598-018-25740-x" ], "originalPMIDs": [ "29769664" ], "originalCellTypes": [ "principal cell", "tufted", "middle", "ventrolateral" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "10ventrolateral_2T0925", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "dc65ee6f8789bd1162a484079b2d4522475273eb31352c1a076d7b29b7a64fcf", "sha256": "dc65ee6f8789bd1162a484079b2d4522475273eb31352c1a076d7b29b7a64fcf", "bytes": 827593, "nodeCount": 19219, "nodeCountsByType": { "1": 3, "2": 16722, "3": 2494 }, "rootCount": 1, "extentMicrometers": { "x": 1667.9499999999998, "y": 3853.21, "z": 5569.69 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Igarashi archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment." ], "metadataFile": "/data/neural-morphology/nmo-111355-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-111355.swc.gz", "compressedBytes": 229963, "compressedSha256": "f879038334e53d726c41869c12427d919ff03fe27df516226578dd051bf9e7f4", "preview": "/data/neural-morphology/nmo-111355-preview.svg", "canSpike": true, "displayAnatomy": { "view": "olfactory-bulb", "layer": "Superficial external plexiform layer", "field": true, "note": "The compact terminal tuft is oriented superficially by morphology, since this source does not label an apical compartment. Its long recorded axon does not determine the apparent dendritic size." } }, { "id": "nmo-252016", "label": "Nigral dopaminergic neuron", "family": "Nigral dopaminergic", "kind": "neuron", "signal": "unknown", "displayScale": 1, "projection": "xy", "species": "rat", "region": "basal ganglia / substantia nigra / pars compacta", "archive": "Goaillard", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=04_02_2014_S4_C7_P21_traces", "sourceApi": "https://neuromorpho.org/api/neuron/id/252016", "downloadUrl": "https://neuromorpho.org/dableFiles/goaillard/CNG%20version/04_02_2014_S4_C7_P21_traces.CNG.swc", "file": "/data/neural-morphology/nmo-252016.swc", "doi": "https://doi.org/10.1523/jneurosci.2331-21.2022", "originalCitation": "https://doi.org/10.1523/jneurosci.2331-21.2022", "originalDois": [ "https://doi.org/10.1523/jneurosci.2331-21.2022" ], "originalPMIDs": [ "-46" ], "originalCellTypes": [ "principal cell", "dopaminergic" ], "domain": "Dendrites, Soma, Axon", "integrity": "Dendrites Moderate, Axon Incomplete", "experimentCondition": [ "Control" ], "ageClassification": "young adult", "protocol": "in vitro", "sourceNote": "This reconstruction exhibits an axon-bearing dendrite (ABD) morphology.", "attributes": "No Diameter, 3D, Angles", "sourceReconstructionName": "04_02_2014_S4_C7_P21_traces", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "ed3c7d570d589cd8b0076b502ac371a55986010302ad76972810cc3ef4e6f9d0", "sha256": "ed3c7d570d589cd8b0076b502ac371a55986010302ad76972810cc3ef4e6f9d0", "bytes": 535114, "nodeCount": 14750, "nodeCountsByType": { "1": 3, "2": 384, "3": 14363 }, "rootCount": 1, "extentMicrometers": { "x": 350.21000000000004, "y": 607.31, "z": 19.5 }, "fileTransformations": [], "signalBasis": "No binary excitatory/inhibitory assignment is asserted for this source in this collection.", "attribution": "Reconstruction from the Goaillard archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source describes the axonal reconstruction as incomplete.", "The source records moderate reconstruction completeness for at least one compartment.", "The source does not provide measured diameters; rendered widths are illustrative." ], "metadataFile": "/data/neural-morphology/nmo-252016-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-252016.swc.gz", "compressedBytes": 153301, "compressedSha256": "baaabf0821115046ad87ec6f58f6ada91872404f08b36d9a8a28b388483b0647", "preview": "/data/neural-morphology/nmo-252016-preview.svg", "canSpike": true, "displayAnatomy": { "view": "substantia-nigra", "layer": "Pars compacta", "field": true, "note": "Identified as a nigral source population in the comparative field. Its output is not assigned a simple excitatory category." } }, { "id": "nmo-60996", "label": "Direct-pathway medium spiny neuron", "family": "Medium spiny", "kind": "neuron", "signal": "inhibitory", "displayScale": 1, "projection": "xy", "species": "mouse", "region": "basal ganglia / ventral striatum / nucleus accumbens / medial / shell", "archive": "Ren", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=dSPN-Sham-A3S2N2", "sourceApi": "https://neuromorpho.org/api/neuron/id/60996", "downloadUrl": "https://neuromorpho.org/dableFiles/ren/CNG%20version/dSPN-Sham-A3S2N2.CNG.swc", "file": "/data/neural-morphology/nmo-60996.swc", "doi": "https://doi.org/10.1038/nn.4199", "originalCitation": "https://doi.org/10.1038/nn.4199", "originalDois": [ "https://doi.org/10.1038/nn.4199" ], "originalPMIDs": [ "26691834" ], "originalCellTypes": [ "principal cell", "medium spiny", "GABAergic", "direct pathway" ], "domain": "Dendrites, Soma, No Axon", "integrity": "Dendrites Moderate", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "", "attributes": "No Diameter, 3D, Angles", "sourceReconstructionName": "dSPN-Sham-A3S2N2", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "dc41c3c59fbd0f849a6f7ac4a30e6b79daae009d85ecbb378bc6dfb2ce41188d", "sha256": "dc41c3c59fbd0f849a6f7ac4a30e6b79daae009d85ecbb378bc6dfb2ce41188d", "bytes": 30908, "nodeCount": 872, "nodeCountsByType": { "1": 3, "3": 869 }, "rootCount": 1, "extentMicrometers": { "x": 250.07999999999998, "y": 428.98, "z": 86.74 }, "fileTransformations": [], "signalSource": "https://neuromorpho.org/api/neuron/id/60996", "signalBasis": "Original NeuroMorpho metadata explicitly labels this cell GABAergic.", "attribution": "Reconstruction from the Ren archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source SWC contains no axon compartment. No axon geometry has been added.", "The source records moderate reconstruction completeness for at least one compartment.", "The source does not provide measured diameters; rendered widths are illustrative." ], "metadataFile": "/data/neural-morphology/nmo-60996-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-60996.swc.gz", "compressedBytes": 12216, "compressedSha256": "1c4211539cf3b5d2ffd4ce7e8c5d9c2ad067e65b30750b7400a94dba2449a2a4", "preview": "/data/neural-morphology/nmo-60996-preview.svg", "canSpike": true, "displayAnatomy": { "view": "striatum", "layer": "Nucleus accumbens shell", "field": true } }, { "id": "nmo-131086", "label": "Cultured oligodendrocyte", "family": "Oligodendrocyte", "kind": "glia", "signal": "none", "displayScale": 0.78, "projection": "xy", "species": "rat", "region": "neocortex", "archive": "Sato-Bigbee", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=Female-Control-Cell10", "sourceApi": "https://neuromorpho.org/api/neuron/id/131086", "downloadUrl": "https://neuromorpho.org/dableFiles/sato-bigbee/CNG%20version/Female-Control-Cell10.CNG.swc", "file": "/data/neural-morphology/nmo-131086.swc", "doi": "https://doi.org/10.1002/glia.23799", "originalCitation": "https://doi.org/10.1002/glia.23799", "originalDois": [ "https://doi.org/10.1002/glia.23799" ], "originalPMIDs": [ "32065429" ], "originalCellTypes": [ "Glia", "Oligodendrocyte" ], "domain": "Processes, Soma", "integrity": "Process Complete", "experimentCondition": [ "Control" ], "ageClassification": "young", "protocol": "culture", "sourceNote": "4 days in vitro", "attributes": "No Diameter, 2D, Angles", "sourceReconstructionName": "Female-Control-Cell10", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "5d6ff46044f27c06e80ec874627b1dcb6a2a57703909d6c523bb1a5bbbe187b0", "sha256": "5d6ff46044f27c06e80ec874627b1dcb6a2a57703909d6c523bb1a5bbbe187b0", "bytes": 28881, "nodeCount": 966, "nodeCountsByType": { "1": 3, "7": 963 }, "rootCount": 1, "extentMicrometers": { "x": 53.64, "y": 90.17, "z": 0 }, "fileTransformations": [], "signalBasis": "Non-neuronal source; no action-potential activity is assigned.", "attribution": "Reconstruction from the Sato-Bigbee archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source does not provide measured diameters; rendered widths are illustrative.", "Cultured cell morphology; it is not a reconstruction of a cell in intact tissue.", "Shown as a passive supporting cell, without neuronal spikes or word recruitment." ], "metadataFile": "/data/neural-morphology/nmo-131086-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-131086.swc.gz", "compressedBytes": 9923, "compressedSha256": "d5c53f0bd97ef0358a14b1d605be6fec18cc709139f968ffb128a6133c53558a", "preview": "/data/neural-morphology/nmo-131086-preview.svg", "canSpike": false, "activityMode": "passive", "displayAnatomy": { "view": "cortex", "layer": "Culture specimen", "field": false, "note": "A P9 rat culture reconstruction, not an in-situ white-matter specimen. Retained in the comparative atlas without invented myelin sheaths." } }, { "id": "nmo-106334", "label": "Hippocampal microglia", "family": "Microglia", "kind": "glia", "signal": "none", "displayScale": 0.78, "projection": "xy", "species": "mouse", "region": "hippocampus", "archive": "Bilkei-Gorzo", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=wtsalF3068iba3_2", "sourceApi": "https://neuromorpho.org/api/neuron/id/106334", "downloadUrl": "https://neuromorpho.org/dableFiles/bilkei-gorzo/CNG%20version/wtsalF3068iba3_2.CNG.swc", "file": "/data/neural-morphology/nmo-106334.swc", "doi": "https://doi.org/10.3389/fnmol.2018.00295", "originalCitation": "https://doi.org/10.3389/fnmol.2018.00295", "originalDois": [ "https://doi.org/10.3389/fnmol.2018.00295" ], "originalPMIDs": [ "30210289" ], "originalCellTypes": [ "Glia", "microglia", "Iba1-positive" ], "domain": "Processes, Soma", "integrity": "Process Moderate", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "Animals were injected with vehicle and sacrificed 24 hours after the injection.", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "wtsalF3068iba3_2", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "754c0bb869cc8728767a1fb8c31b2795970b2a09a4602d315600eb6e061c4d72", "sha256": "754c0bb869cc8728767a1fb8c31b2795970b2a09a4602d315600eb6e061c4d72", "bytes": 49011, "nodeCount": 1380, "nodeCountsByType": { "1": 21, "7": 1359 }, "rootCount": 1, "extentMicrometers": { "x": 80.31, "y": 104.32, "z": 7.5 }, "fileTransformations": [], "signalBasis": "Non-neuronal source; no action-potential activity is assigned.", "attribution": "Reconstruction from the Bilkei-Gorzo archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source records moderate reconstruction completeness for at least one compartment.", "Shown as a passive supporting cell, without neuronal spikes or word recruitment." ], "metadataFile": "/data/neural-morphology/nmo-106334-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-106334.swc.gz", "compressedBytes": 19540, "compressedSha256": "d5ada1bd3b62a57479a169c4eb4c386570862530b30b351beecbca04b2643ee6", "preview": "/data/neural-morphology/nmo-106334-preview.svg", "canSpike": false, "activityMode": "passive", "displayAnatomy": { "view": "hippocampus", "layer": "Interstitial hippocampal space", "field": true } }, { "id": "nmo-120143", "label": "Protoplasmic astrocyte", "family": "Astrocyte", "kind": "glia", "signal": "none", "displayScale": 0.78, "projection": "xy", "species": "mouse", "region": "neocortex / somatosensory / primary somatosensory", "archive": "Garcia", "source": "https://neuromorpho.org/neuron_info.jsp?neuron_name=Ctx-GFAP-astro7", "sourceApi": "https://neuromorpho.org/api/neuron/id/120143", "downloadUrl": "https://neuromorpho.org/dableFiles/garcia/CNG%20version/Ctx-GFAP-astro7.CNG.swc", "file": "/data/neural-morphology/nmo-120143.swc", "doi": "https://doi.org/10.7554/eLife.45545", "originalCitation": "https://doi.org/10.7554/eLife.45545", "originalDois": [ "https://doi.org/10.7554/eLife.45545" ], "originalPMIDs": [ "31194676" ], "originalCellTypes": [ "Glia", "astrocyte", "Protoplasmic", "GFAP-positive" ], "domain": "Processes, Soma", "integrity": "Process Moderate", "experimentCondition": [ "Control" ], "ageClassification": "adult", "protocol": "in vitro", "sourceNote": "", "attributes": "Diameter, 3D, Angles", "sourceReconstructionName": "Ctx-GFAP-astro7", "license": "CC BY 4.0", "licenseUrl": "https://neuromorpho.org/useterm.jsp", "sourceSha256": "b5f4c532af430ed061b62cd37bda6a51193bc1b2ab15560fad0d37561bf4241d", "sha256": "b5f4c532af430ed061b62cd37bda6a51193bc1b2ab15560fad0d37561bf4241d", "bytes": 6998, "nodeCount": 219, "nodeCountsByType": { "1": 3, "7": 216 }, "rootCount": 1, "extentMicrometers": { "x": 44, "y": 52.81, "z": 10.88 }, "fileTransformations": [], "signalBasis": "Non-neuronal source; no action-potential activity is assigned.", "attribution": "Reconstruction from the Garcia archive, NeuroMorpho.Org (RRID:SCR_002145); original study linked in doi.", "caveats": [ "The source records moderate reconstruction completeness for at least one compartment.", "Shown as a passive supporting cell, without neuronal spikes or word recruitment." ], "metadataFile": "/data/neural-morphology/nmo-120143-metadata.json", "provider": "NeuroMorpho.Org", "compressedFile": "/data/neural-morphology/nmo-120143.swc.gz", "compressedBytes": 2549, "compressedSha256": "e4aa659b42818183f3d6074f03562664fa1efa1b062cb85392e6e0b4c46e99df", "preview": "/data/neural-morphology/nmo-120143-preview.svg", "canSpike": false, "activityMode": "passive", "displayAnatomy": { "view": "cortex", "layer": "Interstitial cortical space", "field": true, "note": "This GFAP process reconstruction does not resolve all fine astrocytic processes or vascular contacts." } } ], "delivery": { "originalBytes": 7765562, "compressedBytes": 2434927, "format": "gzip", "note": "Decompresses to the original SWC bytes. The renderer falls back to the original file when needed." } }